Well IIRC that is the same thing that fixed the MP2009 issue too, along with something else.
Really don't know what to suggest unless it's still under warranty but I assume not?
Honestly unless you can get Cindori or someone who understands Kexts and programming better than we do then I don't think you are going to get anywhere.
One idea may be to use the two things included in the Mac Pro 2009 Update 1.1, however I don't know which files they are!
Edit:
AppleHDA.kext and
IOPlatformPluginFamily.kext
Were updated. Im uploading them now to see if it makes any difference using my kexts!
www.thunder-keep.co.uk/stuff/Test_kexts.zip