So here's the thing, and I don't mean to be rude in saying this but I think it is pretty lame for you to be secretive about a mod in which you are trying to profit from, but want others to figure out how to make it work for you. I mean I am all for mods and I hope that yours works out great, I just think it is not right for you to take other peoples ideas and make them your own - then sell them! I know another guy whom did that... good ol' Billy Gates.
Look if you want to do this mod go for it, want peoples assistance, ask away. DO NOT try to hide what you are doing so others cant steal it. If you want to sell it there are heaps of people out there whom would like to have a moddified machine that have no inclination to do it themselves.
Sorry to sound like an ass but it just didn't sit right with me.
Moving along, I have been working on this one for a while but have come to a pretty solid conclusion that it needs to be driven by an active digitizer rather than a passive one. Passive is OK for PDA's and cameras but for computers they are simply too inaccurate. Also they tend to develop weak spots across the middle of the screen due to the large surface area and only being suspended from the sides. Now wacom are pretty much the only active tablet to go for (for OS X compatability) but their standard configs are only 10" then 15". They do OEM digitizers for tablets which are fine and they do 12" models there but I am not sure whether you can buys those in limited numbers or not. Maybe an email to wacom would help you out in that front. I have thought about using a 6 x 8 graphire internals as they come with the controllers etc... however it's only 10" and is too big for the enclosure. I have been considering just getting a 10" display and using that but they are not easy to come by with an XGA res (the absolute minimum required nowdays). Food for thought anyway.
So what do you plan to use the extra space for? I too was planning on skipping the optical drive and using the space for a second HDD or what have you. Hadn't really decided yet - but what are the extra fans for really? Are you planning to overclock the processor? Is it simply because the display is going to be covering the top of the machine not allowing heat to be disipated? I'm very curious about that one.