See, I don't have UIKit Tools installed, so these packages don't show up on either mode. But my point is that these packages don't show up in the repository listings, and are not listed as dependencies of either the Cydia upgrade or UIKit Tools. If these are separate packages, they should be listed as dependencies before we install; if they are simply files installed as part of the UIKit Tools package, they should not be listed as installed packages.
Also? Why the hell is UIKit Tools a dependency of Cydia?
ETA: And can those of you who talk about changing user modes (hacker, developer, etc.) explain how you do it?