While USB 3.0 theoritical speed is 5 Gbit/sec, it still has a # I/O operarions limitation that even a slow SSD surpasses. Still faster than a hard drive. eSATA or Thunderbolt are both better overall, especially for 4k read/writes.
To an extent, yes, sure Thunderbolt is better. But not so much for random reads (where the drive is likely limiting?):
USB 3.0 SIIG (ASMedia 1051e) enclosure w/ Samsung 830 SSD:
Sequential 207.32
Uncached Write 401.47 246.50 MB/sec [4K blocks]
Uncached Write 366.75 207.50 MB/sec [256K blocks]
Uncached Read 81.19 23.76 MB/sec [4K blocks]
Uncached Read 568.66 285.81 MB/sec [256K blocks]
Random 529.14
Uncached Write 242.70 25.69 MB/sec [4K blocks]
Uncached Write 653.50 209.21 MB/sec [256K blocks]
Uncached Read 1845.25 13.08 MB/sec [4K blocks]
Uncached Read 731.58 135.75 MB/sec [256K blocks]
Seagate Thunderbolt interface w/ Samsung 830 SSD:
Sequential 281.69
Uncached Write 572.14 351.28 MB/sec [4K blocks]
Uncached Write 419.40 237.30 MB/sec [256K blocks]
Uncached Read 120.41 35.24 MB/sec [4K blocks]
Uncached Read 567.28 285.11 MB/sec [256K blocks]
Random 808.58
Uncached Write 900.22 95.30 MB/sec [4K blocks]
Uncached Write 456.40 146.11 MB/sec [256K blocks]
Uncached Read 2189.62 15.52 MB/sec [4K blocks]
Uncached Read 841.53 156.15 MB/sec [256K blocks]
But Thunderbolt is just not catching on...
My overall point is that there are USB 3.0 enclosures that are
drastically better than others, and I'd love to understand exactly what makes what enclosure faster. A shootout of USB 3.0 enclosures would be immensely helpful. There just aren't many Thunderbolt enclosures, & eSATA is not a standard interface for most laptops. Hence my interest in USB 3.0, despite the fact that I own a rMBP. That said, I'd love to see some great TB enclosures. That Seagate TB interface, as well as the Buffalo MiniStation TB enclosure, heated up like crazy though... makes me nervous.