Are you really comparing USB3's "127 devices supported" with daisy-chaining up to 7 Thunderbolt devices (per port)? Wow...
Don't forget that most gpus connected thru 8x lanes instead of 16x offer up to 99% of performance, it doesn't take half! You're being ridiculous. I think it's a great way to be able to offer up to 2 Thunderbolt controllers/ports on computers that don't have many free PCIe lanes (all mainstream cpus/chipsets).
But I agree, USB is perfect for a mouse, a keyboard, a printer or other devices that, you know, matter.
While researching other stuff, I found out that "The first USB 3.0 consumer products were shipped in November 2009". Wow, and after all this time (over 16 months), all that's available in USB3 are a bunch of marginally faster storage units, no audio equipment at all, a couple of video converters that don't even work at USB3 speed,... and the latest (Intel, OCZ,... 550MB/s read) SSDs can already saturate USB3*, that's a glorious future. The first Thunderbolt devices (the MBPs) were just release a month ago. I really think you should give Thunderbolt 16 months too, and we'll see what's available then.
* USB3 raw throughput is 4 Gbit/s, and the specification considers it reasonable to achieve 3.2 Gbit/s (0.4 GB/s or 400 MB/s), or more, after protocol overhead.
Of course, expecting just Thunderbolt ports on a computer is also ridiculous and USB ports should stay on computers (until something else happens), for exactly what you said, mouse, keyboard, and some storage units, simple audio/video equipment, etc. It's really great for that. But Thunderbolt offers much more potential right from the start with a dozen of 3rd parties working on different kind of devices, not just storage units.
If you're really unhappy that the new MBPs don't offer USB3 ports, then you should complain to Apple (for not using a dedicated controller) AND Intel (for not integrating USB3 with Sandy Bridge chipsets), you don't need to take it on Thunderbolt because it doesn't take away anything, all previous ports are still there, you don't have to use different adapters for the miniDP output, nothing has changed, and when available, you may be able to use a new kind of devices on your MBP, fast external storage or course but also better audio/video equipment than what exists today in USB, FW, or else format.
The fact is that if you're happy with the docking and USB3 features of your current computers (as it seems from your previous posts), why does it matter to you that Apple has implemented Thunderbolt on the new MBPs?