Agreed, the X1E, has been the best laptop i've owned. In some ways its surpassed how I felt about my 2012 rMBP which I've long said it was the best laptop i've ever owned. The Thinkpad is surpassing that simply because the 2012 MBP wasn't really upgradeable, (ram no SSD yes) but the X1E has replaceable ram, ssd, and battery.
I agree with you. Lenovo has those advantages.
But bare in mind the next argument: X1E brings nothing new to the laptop universe.
First rMBP actually brought something new and really great - high res screens on laptop market.
And while it wasn't great at start (usually nothing new is great at start!), it was something new, useful and really great. Sure OSX at the time lagged behind, so we had some lag... But I have to give Apple credit where credit is due. They went with retina screens almost fully ready, and within a year, 99,99% of the apps supported retina screens, while even to this day, windows scaling is a complete joke.
And I will give Apple credit once again for sticking with the resolution to this day, because I find 4K to be useless on laptops, while taxing on hardware.
But with all that said, only thing today that would get me to buy any MBP is Mac OS. And that is if Apple gets their hardware right. But I gave up all hopes of that ever happening, since I really have no intentions on paying 100% premium on hardware that I need.
With X1E I get all that I want from a laptop, except Mac OS. But without Mac OS I can get by and live. But without ports, at least good keyboard and without at least being able to upgrade/fix some stuff by myself, I refuse to live without.
So with all tha said, chances of Apple coming up with MBP for my needs are slim to zero. Mac Mini? Great! I love that little thing. But MBP? When compared to something like X1E, it's a complete joke.