FIX for Disk Utilities "Repair Permissions" errors still showing up...
Here is the FIX (solution) to getting rid of those annoying messages that keep coming up "every time" you run "Repair Permissions".
I COPIED POWERPC APPS TO INTEL
I had copied my applications, protools plugins, user files, some library files from a Mac G5 Quad OS Tiger, to Mac Pro with the Apple Partition with Leopard installed. Then I realized that the Mac Pro uses GUID partition. So I formatted the hard drive and then formatted the drive, partitioned using GUID Partition, and installed Snow Leopard, then copied everything over again from my backup cloned drive (I use Carbon Copy for cloned backups). Then I updated to OS 10.6.8.
NOTE: My original installs started 10 years ago on a MacBook, then G5 Dual, then copied to my G5 Quad, then to Mac Pro Intel computer... so my system should be very messed up, right? NO. Follow these instructions to fix your errors for good!!!!!!!!!!!!!!!!!!
I then ran Disk Utility "Repair Permissions" and Java errors came up! I ran this about 10 times and it wouldn't fix the errors. I monkeyed around a bit with different utilities like Cocktail, CleanMyMac, DiskWarrior etc. Then ran Repair Permissions again, and now the java errors were gone, but now I had some "CoreServices/RemoteManagement" errors that wouldn't go away. Also had SUID errors, private etc errors and more.
HERE IS THE FIX (Solution)
1. Backup you hard drive. Always have a full cloned backup, just in case something goes wrong. If you end up with a non-bootable druve after the following procedures, simply use Carbon Copy to copy the backup hard drive, back to your main Hard Drive. But you should be fine if you follow each step of instructions.
2. If you have Snow Leopard installled. Use your original Snow Leopard DVD install disc and boot from it.
3. Once Snow Leopard DVD boots, click arrow for "language". Then go to top menu and click on "Reset Password". Then click "Reset" button (bottom of box) for both the "User" and the "System" (there's a drop-down menu to choose each)
4. Run Disk Utilities "Repair Permissions", also "always" run "Repair Disk" after Repair Permissions (just in case there's an error)
5. Reinstall Snow Leopard over your existing OS Version using DVD.
6. Once that is done, your computer will reboot. Now you are running off your Hard Drive. Go to the "Apple" (top left of screen) and click on "About This Mac". You no longer will see the version you had previous to following these steps, because you "Reinstalled" the OS over your last OS. In my case it used to be 10.6.8, after reinstalling OS from Snow Leopard original DVD, it was now back to OS 10.6.3.
IMPORTANT STEP:
Open Disk Utilites and run "Repair Permissions" and "Repair Disk" (in that order). If you have an error, such as, in my case "System/Library/CoreServices/RemoteManagement/" .... Drag "RemoteManagagement" to the "Trash" (I don't empty trash, just leave it there)
7. Now go to "Apple" and select "Software Update". Install all the updates that you want. I installed my Epson printer driver, and Airport. Then run Repair Permissions and Repair Disk. Repair Permissions found a bunch of "Airport" errors. Then ran Repair Permissions again, and it came up "clean" with no errors. Then reboot computer.
NOTE: I have MacOSCombo10.6.8" file downloaded already, so I don't have to download from Internet every time I need to reinstall 10.6.8. So I launch the OS 10.6.8 and then restart computer, and a fresh new uncorrupted "RemoteManagement" had been installed.
8. Then run Disk Utilities again and "ALL YOUR ERRORS ARE GONE"!!!!! YOU'RE DONE WITH THOSE ANNOYING ERRORS IN "DISK PERMISSIONS". NOW YOU CAN SEE IF YOU "REALLY" HAVE ERRORS. AND USE THE SOFTWARE HOW IT WAS INTENDED!!!!
*** NEXT IS THE MOST IMPORTANT STEP ***
9. EXTREMELY IMPORTANT STEP!!!!!!! Make sure you use TechTool eDrive or your original OS Install DVD and check "Volume Structure". Then "Rebuild Desktop".
After such a procedure of doing all these steps, you need to "Rebuild Desktop", or else you may have FATAL ERRORS! In my case originally I didn't "Rebuild Desktop", and then had external drives not mounting, and Carbon Copy backup would unmount external drives and freeze.
SUMMARY OF PROCEDURE: If you have different errors, I would think this procedure would work the same. My errors were "Java" and "RemoteManagement"... you may have different errors!