Well I just figured out what is causing issues. Over my spring break last week, I didn't use a VPN because I never do unless I am at school. The only times it heated up was when so was playing a game on the car ride to Texas and back. My Aunt has a 6S too and her phone didn't heat up like mine did playing the same game. I don't exactly know why the processor acts this way, but whatever I guess. Just a few mins ago I was listening to music on Spotify with VPN on through settings instead of through app. The phone heated up randomly and the battery started discharging crazy fast. I did the classic clearing of RAM by holding the home button in the power off screen. Spotify cut out and the VPN disconnected. Then the phone immediately started cooling down. I just don't understand why a VPN connection would do that. I hate it too, because we have limited cellular data and the school's web filters disables a lot unless you use a VPN connection.
I have pretty much narrowed it down to the processor. If I play a game for 5 mins, it will just about burn your hands, and occasionally the VPN connection will do the same thing. I hate that it does this, but I don't expect to have this phone much longer. I don't feel that the iPhone 6S is a good investment for a phone, and that is mostly from my experience. Thanks for the help everyone.