I thought on most newer iOS devices, the charger (the charger is in the device. The power supply is the white brick they send us) only allows 2.4A of total current to protect the battery. SO in theory, it doesn't matter if you use the 12W or 29W power supply because the iPad Pro will only take 2.4A of current. (Unless I am mistaken and iPAD pro can use higher current.) The only place where the 29W power supply will help is if you want to charge the iPad Pro while using the device at the same time because it takes some charge to use the iPad as well as extra to charge the battery.
So if the iPad PRO battery is a 10,300 mAh battery and you have 2400mA of current, then it should take 10300/2400=4.3 hours to charge, regardless if you use a 12W or 29W power supply if the iPAD is not being used. There is no way to faster charge the iPAD pro UNLESS ITS CHARGER allows for higher current....which I have yet to hear otherwise.