The context of this article on Mac Rumors is about Civil War titles and the use of the confederate flag in said titles. Actual history is what is being referred to by using the flags IN CONTEXT, and not the perverted adaptation and adoption of Joe Billy-Bob's muddin' rig's decoration.
So if the removals reflect only a decision based on the app image and its appearance in store, and not based on "historical appearance in context," you would be fine with the decision? (Note that the "Dixie Cross" "confederate flag" we are talking about actually had limited, historically correct, relevance to the Confederacy in general. )