It's a Presonus Firebox. It's an outboard box that contains A/D converters and sends the digital audio data to the computer via FW. Essentially the same thing that your Maya card does except the Maya has the A/D converters on the card itself.
The only thing I can think of that's really different between them is there may be some extra power running over the FW connection that wouldn't be there with the Maya. I'm using an external power source for the Firebox but it seems at least possible that there's still current running over the FW cable. I really don't know one way or the other though & I'm not sure how that would impact our problem.
When you installed your FW card... did you have to install drivers or does OSX use the default Firewire drivers?
Perhaps it's irrelevant what hardware is used and depends solely on what drivers are used. In other-words, firewire via onboard or via PCIe doesn't matter since they both use the same drivers which hooks into the problem?