Hi Derek.
I received the new BETA and installed it. From my tests I can see that at least the Silence bug was fixed, as I set it to be silenced from 10:00PM-7:00AM and I received some notifications this morning and they were pushed with sound.
BUT, it seems that the POP accounts still some kind of a bug, I can tell you that it is not asking me to re-validate the account every 15 minutes but now the Badge count keep growing and since I've been testing it, it doesn't delete the Badge even when I have read it and delete it. I must double check my email client settings just to see if it's getting deleted from the server, but as far as I know it should.
Just letting you know some details, I can confirm later if it reset the badge count or not, thanks.