I said the MP was a server/workstation. More of a workstation, but regardless, it certainly is not a desktop. As such, it's expected to require ECC of some sort, DDR3 ECC in this case.
Given the memory pricing isn't as bad as the FB-DIMM's, it won't be as bad this time. The only snag, is the way memory is distributed. You can still get more.
Let's compare say, the absolute minimum of DDR3 ECC for three channel operation. So 3GB/CPU, for 6GB total. Now, in the current machine, you can get away with 4GB to operate all 4 channels. This is the part that may cause memory to go up per say, but you still get more memory. Not the easiest comparison, and $/GB may be the easiest for people to understand.
The best 1:1 comparison might be 12GB, as it's a capacity that both systems are capable of, and allows all channels to operate. Easier perhaps.
Crucial is currently offering DDR3 1333MHz ECC Unbuffered (
6GB Kit) for $267.97 (~$45/GB). So 12GB will be ~$536. Not terrible, but not wonderful either. IIRC, FB-DIMM went for ~$75 - 85/GB when it was first available. So not only is the $/GB lower, so is the initial retail price for the same amount of memory. If using smaller amounts, where there isn't a 1:1 comparison, YMMV.

Please keep in mind, I'm not referring to current pricing on FB-DIMM, which is substantially lower than when it was first available for the Mac Pro.