Not possible because they still must go through customs in AK or IN. They can't just be flown directly to these cities.
You made me laugh with your "you don't know much about logistics" comment. Based on what you wrote apparently all you know about the subject is what you learn from a UPS ad. i
It does matter because FedEx and UPS can only fly into one of their hubs set up for incoming international packages. Uncle Sam wants a peek. Those hubs are in Anchorage, Indianapolis, Lexington, and Memphis. From there they are routed to the final designation city.
Also, the service Apple uses gives FedEx and UPS flexibility as to when they put them on a plane - typically last in. This gets Apple the best rate possible. Apple isn't going to waste $ to "rush" product to the U.S. two weeks before launch. It's going to save every last nickel to get them here "just in time". That's logistics.
UPS and FedEx aren't the only cargo carriers out there.
If you have enough money, and Apple does, you could charter a cargo aircraft to fly to just about anywhere you want.
Even if the plane has to stop in ANC for customs, read the article: "The six flights, which are taking place between yesterday and March 9, are said to be part of itineraries moving iPad 3 units to the United States, with three flights ultimately headed to Chicago's O'Hare airport, two headed to Los Angeles, and one headed to New York's Kennedy airport."
That's where the plane's final destination might be after a customs and refueling stop in ANC.