Well, figured I'd follow up here regarding my phone issues after restoring a backup. I went to the apple store yesterday and they confirmed that the backup I restored "must have been corrupt" and there was nothing I could do to save the data and would have to start fresh.
By the way, I used iCloud backup, so for those of you who do as well, be weary, and maybe every once and awhile to a backup to your PC just to have something else to fall back on if your iCloud backup is corrupt like mine was.
I confirmed that a fresh restart did intact fix the 100% processor usage all the time error. Little hint for those of you who are experiencing the same issue but don't want to lose all your data:
Grab "IExplorer" (for Mac or PC), plug your phone in, and it will let you get down into all the app files. Back up any game/app data onto a folder somewhere else. When you reload your phone and reinstall the apps, copy the backed up files over to the phone and you will get all your save files back.
I was able to recover everything but my "Cut The Rope" save files, which I can live with.